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T

TasksFrame - Class in chemCast.application
 
TasksFrame(Hashtable<String, ActionMap>, String, Component) - Constructor for class chemCast.application.TasksFrame
 
test() - Method in class chemCast.test.BigFileTest
 
test() - Method in class chemCast.test.BigTableTest
 
test() - Method in class chemCast.test.ConfigTest
 
test() - Method in class chemCast.test.data.ChemCastDescriptorTest
 
test() - Method in class chemCast.test.data.EndpointTest
 
test() - Method in class chemCast.test.data.PropertyImporterTest
 
test() - Method in class chemCast.test.data.SimilarityDefTest
 
test() - Method in class chemCast.test.ui.MatrixToolbarTest
 
test() - Method in class chemCast.test.ui.PropertiesPanelTest
 
test() - Method in class chemCast.test.weka.WekaTest
 
testAll() - Method in class chemCast.test.data.ChemCASTModuleTest
 
testArrays() - Method in class chemCast.test.BigFileTest
This tests how many Double[] arrays can fit in memory.
testArrays1() - Method in class chemCast.test.BigFileTest
This tests how many double[] arrays can fit in memory.
testAtomEnvironments() - Method in class chemCast.test.NearestNeighborsSimilaritySubsetsTest
 
testAttributeSelection() - Method in class chemCast.test.weka.WekaTest
 
testBitsets() - Method in class chemCast.test.BigFileTest
This tests how many bitsets can fit in memory.
testBuild() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
TestChart - Class in chemCast.test.ui
TODO add description
TestChart(String) - Constructor for class chemCast.test.ui.TestChart
 
TestChartDatasets - Class in chemCast.test.ui
 
TestChartDatasets(String) - Constructor for class chemCast.test.ui.TestChartDatasets
 
testClusterer() - Method in class chemCast.test.weka.WekaTest
 
testColor() - Method in class chemCast.test.data.SubsetTest
 
testCreate() - Method in class chemCast.test.data.SubsetTest
 
testDescriptors() - Method in class chemCast.test.data.ChemCASTModuleTest
 
testDistanceInstanceInstance() - Method in class chemCast.test.weka.JackardSimilarityTest
 
testDistanceInstanceInstanceDoubleBoolean() - Method in class chemCast.test.weka.CosineSimilarityTest
Test method for chemCast.weka.CosineSimilarity#distance(weka.core.Instance, weka.core.Instance, double, boolean).
testDistanceInstanceInstanceDoubleBoolean() - Method in class chemCast.test.weka.DiceSimilarityTest
 
testDistanceNominal() - Method in class chemCast.test.weka.JackardSimilarityTest
 
testFingerprints() - Method in class chemCast.test.NearestNeighborsSimilaritySubsetsTest
 
testGetPredictedFieldName() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testHashtable() - Method in class chemCast.test.BigFileTest
This tests how many hashtables can fit in memory.
testHashtable() - Method in class chemCast.test.data.SimilarityDefTest
 
testHashtable1() - Method in class chemCast.test.data.SimilarityDefTest
 
testIterator() - Method in class chemCast.test.BigFileTest
 
testlistToXML() - Method in class chemCast.test.data.EndpointTest
 
testlistToXML() - Method in class chemCast.test.data.SimilarityDefTest
 
testlistToXML() - Method in class chemCast.test.data.SubsetTest
 
testLookup() - Method in class chemCast.test.BigFileTest
 
testMatrix() - Method in class chemCast.test.BigFileTest
new double[1000000][100] Out of memory new double[1000000][100] Out of memory new double[500000][10] OK new double[500000][20] Out of memory new double[500000][50] Out of memory new double[500000][100] Out of memory new double[250000][10] OK new double[250000][20] OK new double[250000][50] Out of memory new double[250000][100] Out of memory
testMolecules() - Method in class chemCast.test.BigFileTest
This tests how many IAtomContainers can fit in memory.
testMoleculesArrayProperty() - Method in class chemCast.test.BigFileTest
One more test how many IAtomContainers can fit in memory.
testPostProcessDistances() - Method in class chemCast.test.weka.CosineSimilarityTest
Test method for CosineSimilarity.postProcessDistances(double[]).
testPostProcessDistances() - Method in class chemCast.test.weka.DiceSimilarityTest
 
testPostProcessDistances() - Method in class chemCast.test.weka.JackardSimilarityTest
 
testPredict() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testProcess() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testProcessing() - Method in class chemCast.test.BigFileTest
 
testProcessing() - Method in class chemCast.test.ui.TestChart
 
testProcessInstance() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testSetClassProperty() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testSetDatasets() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testSetDescriptors() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testSetUseAtomEnvironments() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testSetUseFingerprints() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
testToXML() - Method in class chemCast.test.data.SubsetTest
 
testWekaSimilarityModel() - Method in class chemCast.test.weka.WekaSimilarityModelTest
 
toString() - Method in class chemCast.data.FilteredMoleculesFile
 
toString() - Method in class chemCast.data.MoleculesFile
 
toString() - Method in class chemCast.data.MultiplePropertyFilters
 
toString() - Method in class chemCast.data.ObjectPropertyFilter
 
toString() - Method in class chemCast.data.PairwiseSimilarityFilter
 
toString() - Method in class chemCast.data.ProcessorFilter
 
toString() - Method in class chemCast.data.RangePropertyFilter
 
toString() - Method in class chemCast.data.SelectedItem
 
toString() - Method in class chemCast.similarity.data.AtomEnvironmentSimilarity
 
toString() - Method in class chemCast.similarity.data.ChemCastDescriptor
 
toString() - Method in class chemCast.similarity.data.ChemCastDescriptorsList
 
toString(Collection<? extends IChemCastObject>) - Static method in class chemCast.similarity.data.ChemCastObjectFactory
 
toString() - Method in class chemCast.similarity.data.Dataset
 
toString() - Method in class chemCast.similarity.data.DatasetDef
 
toString() - Method in class chemCast.similarity.data.Endpoint
 
toString() - Method in class chemCast.similarity.data.Endpoints
 
toString() - Method in class chemCast.similarity.data.MCSSSimilarity
 
toString() - Method in class chemCast.similarity.data.SimilarityDef
 
toString() - Method in class chemCast.similarity.data.SimilarityDefs
 
toString() - Method in class chemCast.similarity.data.SimilarityModel
 
toString() - Method in class chemCast.similarity.data.Subset
 
toString() - Method in class chemCast.similarity.data.Subsets
 
toString() - Method in class chemCast.similarity.data.ToxTreeSimilarity
 
toString() - Method in class chemCast.ui.actions.ChemCASTAction
 
toString() - Method in class chemCast.ui.actions.ToxmatchAction
 
toString() - Method in class chemCast.ui.actions.ViewModeAction
 
toString() - Method in class chemCast.ui.MoleculesXYZDataset
 
toString() - Method in class chemCast.weka.CosineSimilarity
 
toString() - Method in class chemCast.weka.DiceSimilarity
 
toString() - Method in class chemCast.weka.JaccardSimilarity
 
toString() - Method in class chemCast.weka.WekaClustering
 
toString() - Method in class chemCast.weka.WekaSimilarityModel
 
ToxmatchAction - Class in chemCast.ui.actions
 
ToxmatchAction(ChemCASTModule, JFrame, int) - Constructor for class chemCast.ui.actions.ToxmatchAction
 
ToxmatchAction(ChemCASTModule, JFrame, String, int) - Constructor for class chemCast.ui.actions.ToxmatchAction
 
ToxmatchAction(ChemCASTModule, JFrame, String, Icon, int) - Constructor for class chemCast.ui.actions.ToxmatchAction
 
ToxmatchApplication - Class in chemCast.application
 
ToxmatchApplication(String, int, int, String[]) - Constructor for class chemCast.application.ToxmatchApplication
 
ToxTreeSimilarity - Class in chemCast.similarity.data
 
ToxTreeSimilarity() - Constructor for class chemCast.similarity.data.ToxTreeSimilarity
 
TrainingSetOpenAction - Class in chemCast.ui.actions
 
TrainingSetOpenAction(ChemCASTModule, JFrame, int) - Constructor for class chemCast.ui.actions.TrainingSetOpenAction
 
TrainingSetOpenAction(ChemCASTModule, JFrame, String, int) - Constructor for class chemCast.ui.actions.TrainingSetOpenAction
 
TrainingSetOpenAction(ChemCASTModule, JFrame, String, Icon, int) - Constructor for class chemCast.ui.actions.TrainingSetOpenAction
 

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