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C
calculate(IAtomContainer)
- Method in class chemCast.similarity.data.
ChemCastDescriptor
centerScreen(Component)
- Method in class chemCast.ui.wizard.
WizardWrapper
chartMouseClicked(ChartMouseEvent)
- Method in class chemCast.ui.
MyChart
chartMouseClicked(ChartMouseEvent)
- Method in class chemCast.ui.
SimilarityResultViewer
chartMouseMoved(ChartMouseEvent)
- Method in class chemCast.ui.
MyChart
chartMouseMoved(ChartMouseEvent)
- Method in class chemCast.ui.
SimilarityResultViewer
chemCast.application
- package chemCast.application
chemCast.data
- package chemCast.data
chemCast.events
- package chemCast.events
chemCast.exception
- package chemCast.exception
chemCast.similarity.data
- package chemCast.similarity.data
chemCast.test
- package chemCast.test
chemCast.test.data
- package chemCast.test.data
chemCast.test.ui
- package chemCast.test.ui
chemCast.test.weka
- package chemCast.test.weka
chemCast.ui
- package chemCast.ui
chemCast.ui.actions
- package chemCast.ui.actions
chemCast.ui.wizard
- package chemCast.ui.wizard
chemCast.weka
- package chemCast.weka
ChemCASTAction
- Class in
chemCast.ui.actions
ChemCASTAction(ChemCASTModule, JFrame, int)
- Constructor for class chemCast.ui.actions.
ChemCASTAction
ChemCASTAction(ChemCASTModule, JFrame, String, int)
- Constructor for class chemCast.ui.actions.
ChemCASTAction
ChemCASTAction(ChemCASTModule, JFrame, String, Icon, int)
- Constructor for class chemCast.ui.actions.
ChemCASTAction
ChemCastDescriptor
- Class in
chemCast.similarity.data
ChemCastDescriptor(String, LiteratureEntry)
- Constructor for class chemCast.similarity.data.
ChemCastDescriptor
ChemCastDescriptor(String, int, LiteratureEntry)
- Constructor for class chemCast.similarity.data.
ChemCastDescriptor
ChemCastDescriptor(String, int, int, LiteratureEntry)
- Constructor for class chemCast.similarity.data.
ChemCastDescriptor
ChemCastDescriptorsList
- Class in
chemCast.similarity.data
ChemCastDescriptorsList(Element)
- Constructor for class chemCast.similarity.data.
ChemCastDescriptorsList
ChemCastDescriptorsList()
- Constructor for class chemCast.similarity.data.
ChemCastDescriptorsList
ChemCastDescriptorTest
- Class in
chemCast.test.data
ChemCastDescriptorTest(String)
- Constructor for class chemCast.test.data.
ChemCastDescriptorTest
ChemCastListTableModel
- Class in
chemCast.ui
ChemCastListTableModel(IChemCastList)
- Constructor for class chemCast.ui.
ChemCastListTableModel
ChemCASTModule
- Class in
chemCast.application
ChemCASTModule()
- Constructor for class chemCast.application.
ChemCASTModule
ChemCASTModuleTest
- Class in
chemCast.test.data
ChemCASTModuleTest()
- Constructor for class chemCast.test.data.
ChemCASTModuleTest
ChemCastObject
- Class in
chemCast.similarity.data
ChemCastObject(Element)
- Constructor for class chemCast.similarity.data.
ChemCastObject
ChemCastObject()
- Constructor for class chemCast.similarity.data.
ChemCastObject
ChemCastObjectFactory
- Class in
chemCast.similarity.data
ChemCastObjectFactory()
- Constructor for class chemCast.similarity.data.
ChemCastObjectFactory
ChemCastWizardPanelDescriptor
- Class in
chemCast.ui.wizard
ChemCastWizardPanelDescriptor(Object, Object, Object, JComponent, ImageIcon)
- Constructor for class chemCast.ui.wizard.
ChemCastWizardPanelDescriptor
clear()
- Method in class chemCast.similarity.data.
ChemCastDescriptorsList
clear()
- Method in class chemCast.similarity.data.
ChemCastObject
clear()
- Method in class chemCast.similarity.data.
Dataset
clear()
- Method in class chemCast.similarity.data.
Endpoints
clear()
- Method in class chemCast.similarity.data.
SimilarityDefs
clear()
- Method in class chemCast.similarity.data.
SimilarityModel
clear()
- Method in class chemCast.similarity.data.
SimilaritySubsets
clear()
- Method in class chemCast.similarity.data.
Subsets
clear()
- Method in class chemCast.similarity.data.
SubsetSimilarityMatrix
clearAvailableProperties()
- Method in class chemCast.data.
FilteredMoleculesFile
clearAvailableProperties()
- Method in class chemCast.data.
MoleculesFile
clickRow(JTable, int)
- Method in class chemCast.ui.
ListPanel
close()
- Method in class chemCast.application.
ChemCASTModule
close()
- Method in class chemCast.data.
FilteredMoleculesFile
close()
- Method in class chemCast.data.
MoleculesFile
close()
- Method in class chemCast.similarity.data.
AtomEnvironmentSimilarity
close()
- Method in class chemCast.similarity.data.
ChemCastDescriptorsList
Color2Hex(Color)
- Static method in class chemCast.similarity.data.
Dataset
compareTo(Object)
- Method in class chemCast.similarity.data.
ChemCastDescriptorsList
compareTo(Object)
- Method in class chemCast.similarity.data.
DatasetDef
compareTo(Object)
- Method in class chemCast.similarity.data.
Endpoint
compareTo(Object)
- Method in class chemCast.similarity.data.
Endpoints
compareTo(Object)
- Method in class chemCast.similarity.data.
SimilarityDef
compareTo(Object)
- Method in class chemCast.similarity.data.
SimilarityDefs
compareTo(Object)
- Method in class chemCast.similarity.data.
Subset
compareTo(Object)
- Method in class chemCast.similarity.data.
Subsets
CompoundsListReport
- Class in
chemCast.ui
TODO add description
CompoundsListReport(RandomAccessFileTableModel, String)
- Constructor for class chemCast.ui.
CompoundsListReport
conditions
- Static variable in class chemCast.data.
PairwiseSimilarityFilter
ConfigAction
- Class in
chemCast.ui.actions
ConfigAction()
- Constructor for class chemCast.ui.actions.
ConfigAction
ConfigTest
- Class in
chemCast.test
ConfigTest()
- Constructor for class chemCast.test.
ConfigTest
ConfigTree
- Class in
chemCast.ui
Config file editor
ConfigTree()
- Constructor for class chemCast.ui.
ConfigTree
ConfiguredTrainingSetOpenAction
- Class in
chemCast.ui.actions
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, int)
- Constructor for class chemCast.ui.actions.
ConfiguredTrainingSetOpenAction
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, String, int)
- Constructor for class chemCast.ui.actions.
ConfiguredTrainingSetOpenAction
ConfiguredTrainingSetOpenAction(ChemCASTModule, JFrame, String, Icon, int)
- Constructor for class chemCast.ui.actions.
ConfiguredTrainingSetOpenAction
CosineSimilarity
- Class in
chemCast.weka
1-(Cosine similarity).
Cosine similarity is Cab=Zab/Math.sqrt(Zaa*Zbb).
CosineSimilarity()
- Constructor for class chemCast.weka.
CosineSimilarity
CosineSimilarity(Instances)
- Constructor for class chemCast.weka.
CosineSimilarity
CosineSimilarityTest
- Class in
chemCast.test.weka
JUnits test for
CosineSimilarity
}
CosineSimilarityTest(String)
- Constructor for class chemCast.test.weka.
CosineSimilarityTest
createButtons(List<?>, List<JRadioButton>, int)
- Method in class chemCast.ui.
RadioBoxPanel
createColumnModel(List<? extends IChemCastObject>)
- Static method in class chemCast.ui.
ListPanel
createData(IReaderListener, PropertyTranslator)
- Method in class chemCast.similarity.data.
DatasetDef
createData(IAtomContainersList, IObjectFilter)
- Method in class chemCast.similarity.data.
Subset
createFilter()
- Method in class chemCast.similarity.data.
Subset
createGraph()
- Static method in class chemCast.ui.
HyperGraphSimilarityPanel
createInstance()
- Method in class chemCast.weka.
Subsets2Instances
createInstances(String)
- Method in class chemCast.weka.
Subsets2Instances
createNew()
- Method in class chemCast.similarity.data.
Subsets
createNewSubset(Subset, IObjectFilter)
- Method in class chemCast.similarity.data.
Subsets
Same as addnewsubset, but does not add to the list.
createPanels()
- Method in class chemCast.ui.wizard.
SubsetWizard
createProcessor()
- Static method in class chemCast.data.
BatchDescriptorImporter
createReader(File, IChemObjectBuilder, IReaderListener)
- Method in class chemCast.data.
MoleculesFile
createResult()
- Method in class chemCast.similarity.data.
ChemCastDescriptorsList
createSimilarityProcessor()
- Method in class chemCast.similarity.data.
SimilarityDef
createSimilarityProcessor()
- Method in class chemCast.similarity.data.
SimilarityModel
CreateSubsetAction
- Class in
chemCast.ui.actions
CreateSubsetAction(ChemCASTModule, JFrame, int)
- Constructor for class chemCast.ui.actions.
CreateSubsetAction
CreateSubsetAction(ChemCASTModule, JFrame, String, int)
- Constructor for class chemCast.ui.actions.
CreateSubsetAction
CreateSubsetAction(ChemCASTModule, JFrame, String, Icon, int)
- Constructor for class chemCast.ui.actions.
CreateSubsetAction
createSubsets(DatasetDef, Subsets)
- Method in class chemCast.similarity.data.
SimilaritySubsets
createSubsets(IAtomContainersList, Subsets)
- Method in class chemCast.similarity.data.
Subsets
createTestDatasetActions(ActionMap, JFrame)
- Method in class chemCast.application.
ChemCASTModule
createWizard(Endpoints)
- Method in class chemCast.test.
ConfigTest
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